nf-core/phyloplace
nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.
evolutionevolutionary-treephylogenetic-placementphylogeneticssequence-classificationtaxonomy-assignment
Version history
This major release of the pipeline introduces a new mode — search and phylogenetic classification — in addition to the previous 1.0.0 version. The two modes are distinguished by the use of separate input sheets with slightly different content, passed to the pipeline using either --phyloplace_input (phylogenetic placement only) or --phylosearch_input (search and phylogenetic classification). See the documentation for details.
Initial release of nf-core/phyloplace, created with the nf-core template.
The pipeline performs phylogenetic placement of nucleotide or amino acid sequences in a reference phylogeny.
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