nf-core/hgtseq
A pipeline to investigate horizontal gene transfer from NGS data
bwa-membwa-mem2fastqcgenomics-visualizationggbiohorizontal-gene-transferkraken2kronamultiqcngssamtoolstaxonomiestidyverse
Version history
Added
- #31 - Fixed issue where single_unmapped reads also include both_unmapped reads, by creating a local module with two steps samtools flag filtering
Fixed
- #31 - Sync
TEMPLATEwithtools 2.8and all nf-core/modules updated
Dependencies
| Dependency | Old version | New version |
|---|---|---|
samtools | 1.15.1 | 1.17 |
multiqc | 1.13 | 1.14 |
Initial release of nf-core/hgtseq, created with the nf-core template.
run with
video introduction
subscribers
165
stars
26
open issues
2
open PRs
1
last release
over 2 years ago
last update
over 2 years ago