nf-core/atacseq      
 ATAC-seq peak-calling and QC analysis pipeline
 atac-seqchromatin-accessibiity 
     
These pages are for an old version of the pipeline (
      Launch version 1.2.0    https://github.com/nf-core/atacseq   1.2.0). The latest
                                stable release is
 2.1.2 
.
   required 
 type: 
   stringtype: 
   booleantype: 
   integertype: 
   stringtype: 
  stringdefault: 
 ./resultstype: 
   stringpattern: 
^([a-zA-Z0-9_\-\.]+)@([a-zA-Z0-9_\-\.]+)\.([a-zA-Z]{2,5})$type: 
   stringtype: 
   stringtype: 
   stringtype: 
   stringtype: 
   stringtype: 
   stringtype: 
   stringtype: 
   stringtype: 
   stringtype: 
   booleanhidden  
 type: 
  stringdefault: 
 s3://ngi-igenomes/igenomes/hidden  
 type: 
   booleantype: 
   integertype: 
   integertype: 
   integertype: 
   integertype: 
   integertype: 
   booleantype: 
   booleantype: 
   booleantype: 
   booleantype: 
   booleantype: 
   integertype: 
   booleantype: 
   booleanhidden  
 type: 
  stringdefault: 
 $baseDir/assets/bamtools_filter_pe.jsonhidden  
 type: 
  stringdefault: 
 $baseDir/assets/bamtools_filter_se.jsontype: 
   booleantype: 
  numberdefault: 
 0.1type: 
   numbertype: 
   numbertype: 
  integerdefault: 
 1type: 
   booleantype: 
   booleantype: 
   booleantype: 
   booleantype: 
   booleantype: 
   booleantype: 
   booleantype: 
   booleantype: 
   booleantype: 
   booleantype: 
   booleantype: 
   booleantype: 
   booleantype: 
   booleanhidden  
 type: 
  stringdefault: 
 masterhidden  
 type: 
  stringdefault: 
 https://raw.githubusercontent.com/nf-core/configs/masterhidden  
 type: 
   stringhidden  
 type: 
   stringhidden  
 type: 
   stringhidden  
 type: 
   stringhidden  
 type: 
  integerdefault: 
 16hidden  
 type: 
  stringdefault: 
 128.GBhidden  
 type: 
  stringdefault: 
 240.hhidden  
 type: 
   booleanhidden  
 type: 
  integerdefault: 
 500000hidden  
 type: 
   stringhidden  
 type: 
   stringhidden  
 type: 
   stringpattern: 
^([a-zA-Z0-9_\-\.]+)@([a-zA-Z0-9_\-\.]+)\.([a-zA-Z]{2,5})$hidden  
 type: 
   booleanhidden  
 type: 
  stringdefault: 
 25.MBhidden  
 type: 
   booleanhidden  
 type: 
   stringhidden  
 type: 
  stringdefault: 
 ${params.outdir}/pipeline_infohidden  
 type: 
   string