Description

Doublet detection in single-cell RNA-seq data

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

h5ad:file

H5AD anndata object

*.h5ad

Output

name:type
description
pattern

h5ad

meta:map

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

*.h5ad:file

H5AD anndata object

*.h5ad

predictions

meta:map

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

*.pkl:file

pandas dataframe containing the doublet classification

*.pkl

versions

versions.yml:file

File containing software versions

versions.yml

Tools

doubletdetection
MIT

Doublet detection in single-cell RNA-seq data

https://github.com/JonathanShor/DoubletDetection 10.5281/zenodo.6349517
included in
scdownstream
maintainer
Github user LeonHafner
get in touch
Ask a question on Slack Open an issue on GitHub