Description

Adds a specified number of bases in each direction (unique values may be specified for either -l or -r)

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

bed:file

Input BED file

*.{bed}

sizes:file

Chromosome sizes file

Output

name:type
description
pattern

bed

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.bed:file

Slopped BED file

*.{bed}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

bedtools
MIT

A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types.

bedtools.readthedocs.io/en/latest/content/tools/slop
included in
deepmodeloptimrarediseasetfactivity
maintainers
Github user edmundmiller
Github user sruthipsuresh
Github user drpatelh
get in touch
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