Description

BamTools provides both a programmer’s API and an end-user’s toolkit for handling BAM files.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

bam:file

BAM file

*.bam

Output

name:type
description
pattern

data

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.{bed,fasta,fastq,json,pileup,sam,yaml}:file

Output file

*.{bed,fasta,fastq,json,pileup,sam,yaml}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

included in
isoseq
maintainer
Github user sguizard
get in touch
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