Software licenses set up for nf-core
To use, run the pipeline with -profile software_license. This will download and launch
the software_license.config which has been pre-configured with a
setup suitable for using Sentieon within the nf-core GHA.
Config file
//Profile config names for nf-core/configs
params {
config_profile_description = 'Software license set up for nf-core by nf-core/configs'
config_profile_contact = 'Maxime U Garcia (@maxulysse)'
config_profile_url = 'https://nf-co.re'
sentieon_extension = null
validationSchemaIgnoreParams = "cf_ploidy,genomes,sentieon_extension,test_data"
}
if (params.sentieon_extension) {
process {
withLabel: 'sentieon' {
ext.sentieon_auth_mech_base64 = secrets.SENTIEON_AUTH_MECH_BASE64 ?: ''
ext.sentieon_auth_data_base64 = secrets.SENTIEON_AUTH_DATA_BASE64 ?: ''
}
}
}
